Beech Ridge's wind farm operates year-round. However, the company has limited operations when bats are most active.
During nighttime from spring to autumn, the turbines operate only when wind speeds exceed 15.43 mph. When wind speeds are lower, the blades are positioned so only minimal rotation occurs.
Beech Ridge says it is proposing other operational steps to try to keep bats from flying into turbine blades.
The wildlife agency said such efforts can reduce bat deaths "with relatively small losses of power generation."
Also, Beech Ridge is pursuing off-site projects aimed at protecting Virginia big-eared and Indiana bat populations.
One project will try to safeguard Indiana bat hibernating, swarming and foraging habitat. The company also plans a cave-gating project to protect hibernating Virginia big-eared bats.
The Indiana bat has been on the federal endangered species list since 1967. The bats are found over most of the eastern U.S., and their 2013 population across 17 states was estimated at 532,846, down 4 percent from 2011.
Indiana bat populations have been hit by white-nose syndrome. The disease prompts bats to wake from their winter hibernation and die when they fly into the winter landscape in a futile search for food.
The Virginia big-eared bat has been listed as endangered since 1979. Its population has increased from 1,300 to more than 13,000 since then in Virginia, West Virginia, Kentucky and North Carolina.
Beech Ridge is seeking the permit to comply with terms of a lawsuit settlement.
The Washington, D.C.-based Animal Welfare Institute and the Williamsburg, W.Va.-based Mountain Communities for Responsible Energy had sued both Beech Ridge Energy and its parent, Chicago-based Invenergy LLC, in 2009.
Beech Ridge built 40 turbines before a federal judge in Maryland ruled that it had failed to obtain the necessary permit.
The West Virginia Public Service Commission approved the wind farm in 2006, but it took a state Supreme Court ruling to clear the way for construction. Local residents had also sued, claiming the project would harm property values and views.